1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttctctttctagttggacatagttttggaagaggtctagttggttgtctttaattttcaaggaacctcttttgcaaggtatcagttaaatttccaatcttcataacatgagtgggtggttgttttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTAGGGTTGATTGCTGCCGGTCAAACTTATGAATCATCTTTCCATATTCGA
species | Physcomitrella patens |
transcript | PP1S33_211V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG GTATGGATCTTGGGCAGCGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTEST: gi|162252971|gb|FC429032.1|FC429032
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTEST: gi|162252972|gb|FC429033.1|FC429033
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTEST: gi|67725482|gb|BJ975741.1|BJ975741
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
EST: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTG GTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
genomic: CAACGGGCTCGTAAATATATTGAAAGCATTCAAAAGGACGATGGCTCTTGgtaagttctc ... tttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTT
gtatcagttaaatttccaatcttcataacatgagtgggtggttgttttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTAGGGTTGATTGCTGCCGGTCAAACTTATGAATCATCTTTCCATATTCGA
ttgtttt CT-rich tract
agttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctctttctagttggacatagttttggaagaggtctagttggttgtctttaattttcaaggaacctcttttgcaaggtatcagttaaatttccaatcttcataacatgagtgggtggttgttttgacgcagGTATGGATCTTGGGCAGTGTGTTTCACGTATGCAATTTGGTTTGGTGTCTTAGGGTTGATTGCTGCCGGTCAAACTTATGAATCATCTTTCCATATTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC