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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaccggagatgatgaaacgaagttactgtgggaggaaccctccagttattgaattagcttgatgtaatcgcattgtctgtttgctacctgactcaatgcacttcttcaatatttgcttctgaactgagcgtgtggtttgccttggttttggcagGAGCGGGTATTGAAAGTTCTTCAAGTTTGGGCAGACTGGTTCTTGTTTTCAGATTCCTTTGTTACTGGCTTGCGTGCAACATTCTTGCGACCAGGAAACT

Basic information

species Physcomitrella patens
transcript PP1S137_118V6.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S137_118V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 3'ss of exon 16
gtaaaaaccggagatgatgaaacgaagttactgtgggaggaaccctccagttattgaattagcttgatgtaatcgcattgtctgtttgctacctgactcaatgcacttcttcaatatttgcttctgaactgagcgtgtggtttgccttggttttggcagGAGCGGGTATTGAAAGTTCTTCAAGTTTGGGCAGACTGGTTCTTGTTTTCAGATTCCTTTGTTACTGGCTTGCGTGCAACATTCTTGCGACCAGGAAACT
                                                             |   | |||| | |   ||| | ||   | | | | |  || |  |||||  || ||  |||  ||    ||| | |  ||||   |   | || |||||| | || ||||||||||| ||||| ||||| ||||||||||| ||||| ||| | | | | | |||  |  | || || ||  |  || || |  |||
-------------------------------------------------------------gtaagttgta-ttgttctgttttttgagtcctttattttattcctttctt-gatgttaccttacgat---agcat-tattttgttgtttctctg-cagGAGAGAGTTTTGAAAGTTCTACAAGTATGGGCGGACTGGTTCTTATTTTCCGATGCATATCTGAATGGACTAAGAGCTACCTTTCTTAGATCAAGCCACT

upper sequence: PP1S137_118V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: GRMZM2G174785_T02 (Zea mays), 3'ss of exon 15
gtaaaaaccggagatgatgaaacgaagttactgtgggaggaaccctccagttattgaattagcttgatgta-atcgcattgtctgtttgctacctgactcaatgcacttcttcaatatttgcttctgaactgagcgtgtggtttgccttggttttggcagGAGCGGGTATTGAAAGTTCTTCAAGTTTGGGCAGACTGGTTCTTGTTTTCAGATTCCTTTGTTACTGGCTTGCGTGCAACATTCTTGCGACCAGGAAACT
                                                                |||  ||  | ||||  | | ||   |||  ||    ||     || |  || ||      ||   |  || || | |||   |  ||| |  |||||| ||||  |||||||||| ||||||||||||||||||||| ||||||| ||| | ||| ||| |||  || | || || ||  |  || |||| ||||
---------------------------------------------------------------gtgacttatgttgcatcattttttaaatactggagcttatttttatccttgatgttcttacatg---tctgcatg-gatttatttctgttctt-cagGAGAGGGTTATGAAAGTTCTACAAGTTTGGGCAGACTGGTTCCTGTTTTCTGATGCATTTCTTAATGGGCTGAGGGCTACTTTTCTTAGATCAGGCAACT

upper sequence: PP1S137_118V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 14
gtaaaaaccggagatgatgaaacgaagttactgtgggaggaaccctccagttattgaattagcttgatgtaatcgcattgtctg-tttgctacctgactcaatgcacttcttcaatatttgcttctgaactgagcgtgtggtttgccttggttttggcagGAGCGGGTATTGAAAGTTCTTCAAGTTTGGGCAGACTGGTTCTTGTTTTCAGATTCCTTTGTTACTGGCTTGCGTGCAACATTCTTGCGACCAGGAAACT
                                                          | |||   |  |||     |||| |   || |  || | |||  | |  |||||  || || | ||||   ||||  | |    ||  || |  ||   ||||| || ||  |||| ||||||||||| ||||||||||||||| | ||||||||| | | ||| | ||| ||||| || || ||  | ||| | || ||||
---------------------------------------------------------gtgagccatacataaaattcttgtttaactttcagcccgcctc--ttcttttcttatat-ttagtttctattctgaatgcgctccttaactggaattctccagGAACGAGTTATGAAGGTTCTTCAAGTCTGGGCAGACTGGTTCCTATTTTCAGATGCATATGTCAATGGATTGCGGGCTACTTTTCTTCGATCTGGGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttcaatatttgcttctgaactgagcgtgtggtttgccttggttttggcagGAGCGGGTATTGAAAGTTCTTCAAGTTTGGGCAGACTGGTTCTTGTTTTCAGATTCCTTTGTTACTGGCTTGCGTGCAACATTCTTGCGACCAGGAAACT
     ttcaatattt  TA-rich tract