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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcaactcttaatccacttccttgttgggaggcgcaagcattaatttgagtacttttacatggttagtttttacatagtatgtctttctccgtgtgtactaattttgacgtcaagtggtgcagGCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCTTCACCG

Basic information

species Physcomitrella patens
transcript PP1S79_266V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37839363|gb|BJ597371.1|BJ597371
EST:     TAAAGAAGCGCTACCACCATG                         GCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT
genomic: TAAAGAAGCGCTACCACCATGgtaattcaac ... agtggtgcagGCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT
EST: gi|162173738|gb|FC349914.1|FC349914
EST:     AAGGAAGTTGATCCTATTGACGAAGTATCTAAAGAAGCGCTACCACCATG                         GCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT
genomic: AAGGAAGTTGATCCTATTGACGAAGTATCTAAAGAAGCGCTACCACCATGgtaattcaac ... agtggtgcagGCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT
EST: gi|37852954|gb|BJ610962.1|BJ610962
EST:     ATCTAAAGAAGCGCTACCACCATG                         GCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT
genomic: ATCTAAAGAAGCGCTACCACCATGgtaattcaac ... agtggtgcagGCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttacatagtatgtctttctccgtgtgtactaattttgacgtcaagtggtgcagGCAGAGCGTGTGGATGAAATCAAAAGGCAAATTAACTGACGATCCTGCTCTTCACCG
                            tactaatttt  TA-rich tract