1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttcaggattctagcgctatcaagttgcttatttactcataaacctatgcgttgctatttgttactaggcagtttttatatcttttaatccctccgtcaatgttctggtaatgtcacgctacgatgtattcactgccgtttcactcatcgtcaactatgatttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATCTTCAGCGTTTGATGTGACAACTAAG
species | Physcomitrella patens |
transcript | PP1S342_20V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAG ATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATEST: gi|162150178|gb|FC326055.1|FC326055
genomic: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAGgttcaggatt ... ttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACAT
EST: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAG ATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATEST: gi|162163444|gb|FC339978.1|FC339978
genomic: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAGgttcaggatt ... ttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACAT
EST: TACGAGGGTGGACAAGTGAGCTACAATCAAG ATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATEST: gi|162171456|gb|FC346731.1|FC346731
genomic: TACGAGGGTGGACAAGTGAGCTACAATCAAGgttcaggatt ... ttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACAT
EST: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAG ATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACAT
genomic: GTACTGGGATAGTCTGTCGTACGAGGGTGGACAAGTGAGCTACAATCAAGgttcaggatt ... ttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACAT
cgctacgatgtattcactgccgtttcactcatcgtcaactatgatttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATCTTCAGCGTTTGATGTGACAACTAAG
tatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaggattctagcgctatcaagttgcttatttactcataaacctatgcgttgctatttgttactaggcagtttttatatcttttaatccctccgtcaatgttctggtaatgtcacgctacgatgtattcactgccgtttcactcatcgtcaactatgatttgagtgcagATGCTCATAGACAGAGAATTGTAAACTGGATTAACGCAACTGGTGGTACATCTTCAGCGTTTGATGTGACAACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG