Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtctgtttaaagcatgcttgcatcgtttacatcgaagctgcatgaaagttgagctgagtcgtattgcttcgcaacaatcgctttcttatattttagtaacaggaaaggaattaatattaatcgagttcttacgtttaaatcactctgatatatgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG

Basic information

species Physcomitrella patens
transcript PP1S173_136V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195982|gb|FC372166.1|FC372166
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|162195983|gb|FC372167.1|FC372167
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|37834281|gb|BJ592293.1|BJ592293
EST:     ATAAGGAAATAGAGGNCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: ATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|18341657|gb|BJ173692.1|BJ173692
EST:     AGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: AGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
EST: gi|162241844|gb|FC418099.1|FC418099
EST:     TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAA                         GAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
genomic: TGGTCAAGGCAAACTATTTGGTGAATAAGGAAATAGAGGGCCGAGCAAgtaagtgtct ... atgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaattaatattaatcgagttcttacgtttaaatcactctgatatatgtttacagGAGTAAAGCGTGAAAATTCTGTCTGGACAAAGCAG
     taatattaat  TA-rich tract