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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacctcaaatttttggatgtttgtcgattagtgaccatctcacgcacttcgagtaatttttttttgattctcaagatacgtggtgtcgtgacgcttgcagGAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGACTTGCAACTCCAATTCGTTCAGTGCAGCGTGTTATTGATGAAAGCGAGG

Basic information

species Physcomitrella patens
transcript PP1S79_156V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196159|gb|FC373500.1|FC373500
EST:     TGTCCTGCTTCGTGAAAACTTCTCATTTCGAAGAATACTTGCGGGTTAAG                         GAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGA
genomic: TGTCCTGCTTCGTGAAAACTTCTCATTTCGAAGAATACTTGCGGGTTAAGgtcagttacg ... acgcttgcagGAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGA
EST: gi|162190538|gb|FC366176.1|FC366176
EST:     TGTCCTGCTTCGTGAAAACTTCTCATTTCGAAGAATACTTGCGGGTTAAG                         GAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGA
genomic: TGTCCTGCTTCGTGAAAACTTCTCATTTCGAAGAATACTTGCGGGTTAAGgtcagttacg ... acgcttgcagGAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcgagtaatttttttttgattctcaagatacgtggtgtcgtgacgcttgcagGAGGTAATAATCTTAGATTTGTTGAAGGTTATCGGTCATCACAGTGCACGACTTGCAACTCCAATTCGTTCAGTGCAGCGTGTTATTGATGAAAGCGAGG
                ttttgat  putative branch site (score: 4)
        taatttttttttgatt  TA-rich tract