1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttctacaaatgatatcacatccttgctgtggtgtaggaagtgtgttgtgttttagttctatggtgaattttgttggacgttgaaatgccactttaaacaaactgttttcctccgactgggaacattttatctcagatatttggtggtgttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAAGATATTGAGGATGACGGTTCCCACTTCATAAGTGCAGTGTGCTGGAAGA
species | Physcomitrella patens |
transcript | PP1S25_325V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAG GCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAAEST: gi|37836323|gb|BJ594331.1|BJ594331
genomic: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAGgtatttctac ... ttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAA
EST: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAG GCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAAEST: gi|162188191|gb|FC363957.1|FC363957
genomic: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAGgtatttctac ... ttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAA
EST: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAG GCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGC
genomic: ACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAGgtatttctac ... ttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGC
gttttcctccgactgggaacattttatctcagatatttggtggtgttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAAGATATTGAGGATGACGGTTCCCACTTCATAAGTGCAGTGTGCTGGAAGA
tgttaat putative branch site (score: 3)
aacattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctacaaatgatatcacatccttgctgtggtgtaggaagtgtgttgtgttttagttctatggtgaattttgttggacgttgaaatgccactttaaacaaactgttttcctccgactgggaacattttatctcagatatttggtggtgttaatcacagGCAATGTCGAAACCGTGTTCTTCTCATAAATTCGGCTCCCCAAACTCTGAAGATATTGAGGATGACGGTTCCCACTTCATAAGTGCAGTGTGCTGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA