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gtatgccgtttggattacctactactatgatgtaggttagttctttcttcttatattttgtccacggcctgccttagattgtattagtttaccttcattctatgctgcatcgtcctctactatatacttaatcaaacgctggtgccagtttgacaaaatatgagtgggttctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCAGCTCTATTTTCACTCGCAACCCAGAAACAATTTTCACTTGGATTGG
species | Physcomitrella patens |
transcript | PP1S237_29V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAG TCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCEST: gi|162180806|gb|FC358307.1|FC358307
genomic: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAGgtatgccgtt ... ctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGC
EST: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAG TCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCEST: gi|162153738|gb|FC329141.1|FC329141
genomic: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAGgtatgccgtt ... ctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGC
EST: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAG TCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCEST: gi|162268955|gb|FC445759.1|FC445759
genomic: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAGgtatgccgtt ... ctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGC
EST: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAG TCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGC
genomic: TTGTGAGGGAAGAATTGTTTGGTCCCGTCCTGTATGTCTTCAAAATCAAGgtatgccgtt ... ctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGC
acttaatcaaacgctggtgccagtttgacaaaatatgagtgggttctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCAGCTCTATTTTCACTCGCAACCCAGAAACAATTTTCACTTGGATTGG
gtttgac putative branch site (score: 15)
ttctgtcttc putative PPT
acaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccgtttggattacctactactatgatgtaggttagttctttcttcttatattttgtccacggcctgccttagattgtattagtttaccttcattctatgctgcatcgtcctctactatatacttaatcaaacgctggtgccagtttgacaaaatatgagtgggttctgtcttcagTCGTTGGAGGAGGCCATTGAGCTGAACAACTCAGTGCCACAGGGCCTCAGCAGCTCTATTTTCACTCGCAACCCAGAAACAATTTTCACTTGGATTGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC