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gtatgtaatcaatcccttcctgatgtatctaagcccgtttgaagttagtagaattagttttcatctgctatgctaccagtgttggagcttaagttttccacttagcaaagattaaaagttactgaaatgagtctttgttaagcaccttatttttttcatgttatcgtgcaatttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGCGATGCATCCTTTTGA
species | Physcomitrella patens |
transcript | PP1S169_73V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162175454|gb|FC350924.1|FC350924
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37832005|gb|BJ590017.1|BJ590017
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37822469|gb|BJ580535.1|BJ580535
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162183680|gb|FC359908.1|FC359908
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162198129|gb|FC373079.1|FC373079
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37827542|gb|BJ585554.1|BJ585554
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162198130|gb|FC373080.1|FC373080
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAANACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37829602|gb|BJ587614.1|BJ587614
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37834715|gb|BJ592727.1|BJ592727
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37828539|gb|BJ586551.1|BJ586551
genomic: TAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|67720614|gb|BJ970873.1|BJ970873
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGAATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162266558|gb|FC442789.1|FC442789
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|162160838|gb|FC337660.1|FC337660
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|208365406|gb|DC950873.1|DC950873
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGEST: gi|37823750|gb|BJ581816.1|BJ581816
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: CTGTGGGATCTTGCTGCGG GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: CTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
aatgagtctttgttaagcaccttatttttttcatgttatcgtgcaatttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGCGATGCATCCTTTTGA
ttatttttttcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaatcaatcccttcctgatgtatctaagcccgtttgaagttagtagaattagttttcatctgctatgctaccagtgttggagcttaagttttccacttagcaaagattaaaagttactgaaatgagtctttgttaagcaccttatttttttcatgttatcgtgcaatttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGGCGATGCATCCTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA