1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aaaatatggatttgatgtgtcttgttgatcttcatcatattctgaaaaaatacatacatggattgtgaaatacggactgacaatctcggtttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGCAAGAGAGGTTGGCTAAATTGTCAGGTGGTGTAGCGGTACTTAAG
species | Physcomitrella patens |
transcript | PP1S149_289V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAANCTGEST: gi|162156171|gb|FC332546.1|FC332546
genomic: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
EST: CTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGEST: gi|162198559|gb|FC373405.1|FC373405
genomic: CTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
EST: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGEST: gi|162192963|gb|FC371946.1|FC371946
genomic: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
EST: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGEST: gi|162268426|gb|FC444195.1|FC444195
genomic: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
EST: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGEST: gi|67576837|gb|BJ949661.1|BJ949661
genomic: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
EST: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAG ATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
genomic: TCTTGGATGGGGGAGGTGACAAGGCTGCGCTCGAAGAGCGAACTGAACAGgtgatttatt ... ttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTG
aaaaatacatacatggattgtgaaatacggactgacaatctcggtttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGCAAGAGAGGTTGGCTAAATTGTCAGGTGGTGTAGCGGTACTTAAG
gactgac putative branch site (score: 4)
tctcggtttctttct putative PPT
tgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatatggatttgatgtgtcttgttgatcttcatcatattctgaaaaaatacatacatggattgtgaaatacggactgacaatctcggtttctttctagATCCGAGAGGCTATCAGCGCTGCCACTTCCGACTACGATAAGGAGAAACTGCAAGAGAGGTTGGCTAAATTGTCAGGTGGTGTAGCGGTACTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG