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...attttagtgaggaatctcttggaatttgtaatgatttgtattgcacacaaggaacctgctgtcattaccatgatacatgcttatgctgagttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGTGAGAGGGTATGGCCCTGTACAATGAAAATACGCAGAATTAGTCTACTC
species | Physcomitrella patens |
transcript | PP1S92_7V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG ATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGEST: gi|37851008|gb|BJ609016.1|BJ609016
genomic: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGGgtacgttttt ... ttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
EST: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG ATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGEST: gi|37851570|gb|BJ609578.1|BJ609578
genomic: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGGgtacgttttt ... ttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
EST: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG ATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGEST: gi|37848164|gb|BJ606172.1|BJ606172
genomic: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGGgtacgttttt ... ttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
EST: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG ATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGEST: gi|37851966|gb|BJ609974.1|BJ609974
genomic: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGGgtacgttttt ... ttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
EST: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG ATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
genomic: TCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGGgtacgttttt ... ttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttagtgaggaatctcttggaatttgtaatgatttgtattgcacacaaggaacctgctgtcattaccatgatacatgcttatgctgagttggttgcagATGCTACTAAGCGGCTCAGTTTGGAGGCAGTAGCCAACCATTCGTGGGTTGTGAGAGGGTATGGCCCTGTACAATGAAAATACGCAGAATTAGTCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - ttgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc