1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgtaaacaagaaatatcactgtacctcagtgttattgtttttattttataaattatttctatgcaaactgatccttgattcgtgtttttctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTACCATCGAGCATTTGAACGCTTATCGGACTGGTGGCCCGTCAGTAGGCAC
species | Physcomitrella patens |
transcript | PP1S79_105V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|37842479|gb|BJ600487.1|BJ600487
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|208367986|gb|DC955393.1|DC955393
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|67700799|gb|BJ961032.1|BJ961032
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|208352691|gb|DC921425.1|DC921425
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|162256291|gb|FC432197.1|FC432197
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|208377554|gb|DC922657.1|DC922657
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|162259818|gb|FC435953.1|FC435953
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|208367694|gb|DC955025.1|DC955025
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|162220174|gb|FC396569.1|FC396569
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|67700542|gb|BJ960775.1|BJ960775
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|67697174|gb|BJ957407.1|BJ957407
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|37846724|gb|BJ604732.1|BJ604732
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|67578914|gb|BJ951081.1|BJ951081
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|162276086|gb|FC452362.1|FC452362
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTAEST: gi|67577666|gb|BJ949833.1|BJ949833
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
EST: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATG CAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
genomic: GAAGGATTACCTGGACCAATTGGCGTGCGACCTCATTGTCTCTCAAGATGgtatgtttga ... ctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTA
tttataaattatttctatgcaaactgatccttgattcgtgtttttctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTACCATCGAGCATTTGAACGCTTATCGGACTGGTGGCCCGTCAGTAGGCAC
tgtttttct CT-rich tract
aaattatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaaacaagaaatatcactgtacctcagtgttattgtttttattttataaattatttctatgcaaactgatccttgattcgtgtttttctggtaatagCAATGGGTTTGGCAGACCTTGGCATCACATCTCACAAAATCGGGGGTCTTACCATCGAGCATTTGAACGCTTATCGGACTGGTGGCCCGTCAGTAGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG