1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...actttgattttctatgaatccagaacgcgtggcttgggtttacgaactgtattgaaacagcgatgagataaatctgaagtgttgtgaaaactacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCGCGAAGGTTATCAGACCCTTCTGAACACAGATTTGAAGAAGGAGCTTGATCACA
species | Physcomitrella patens |
transcript | PP1S180_53V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGTCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAG GTGAC-AAACTGCTAGGAGGA-AAAACTACEST: gi|162265051|gb|FC440930.1|FC440930
genomic: ACGTCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAGgtcaacctca ... ctacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTAC
EST: CCGTGTTTATGCATCTGCAGCTGCTCAGGTCAAGAAGGCGATAGAG GTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCGCGAAEST: gi|100392407|gb|BY953347.1|BY953347
genomic: CCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAGgtcaacctca ... ctacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCGCGAA
EST: CGGTC-GTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAG GTGACGAAACTGCTAGGAGGEST: gi|100404244|gb|BY955328.1|BY955328
genomic: CG-TCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAGgtcaacctca ... ctacttgcagGTGACGAAACTGCTAGGAGG
EST: ACGTCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAG GTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCEST: gi|100398077|gb|BY954076.1|BY954076
genomic: ACGTCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAGgtcaacctca ... ctacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGC
EST: ACGTC-GTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAG GTGACGAAACTGCTAGGAGG
genomic: ACGTCCGTGTTTATGCATATGCAGCTGCTCAGGTCAAGAAGGCGATAGAGgtcaacctca ... ctacttgcagGTGACGAAACTGCTAGGAGG
actgtattgaaacagcgatgagataaatctgaagtgttgtgaaaactacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCGCGAAGGTTATCAGACCCTTCTGAACACAGATTTGAAGAAGGAGCTTGATCACA
agataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttgattttctatgaatccagaacgcgtggcttgggtttacgaactgtattgaaacagcgatgagataaatctgaagtgttgtgaaaactacttgcagGTGACGAAACTGCTAGGAGGAGAAAACTACGTCTTTTGGGGCGGGCGCGAAGGTTATCAGACCCTTCTGAACACAGATTTGAAGAAGGAGCTTGATCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT