1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttcttttttgtgtaggaaaaatgcgtattcggtgcgttagtctgaagttcagggtgccttattattaataggttttttgggaattgtttgtggggcagGCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
species | Physcomitrella patens |
transcript | PP1S9_319V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCCACTGCCCCCGCCGTTCAAAGCAAACTCGTACTCATGCGCCATG GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGGEST: gi|100444429|gb|BY964127.1|BY964127
genomic: CTCCTCCACTGCCCCCGCCGTTCAAAGCAAACTCGTACTCATGCGCCATGgtagtgaatt ... tgtggggcagGCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
EST: TCCTCCACTGCCCCCCGC-GTTCAAAGCAAACTCGTACTCATGCGCCATG GCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
genomic: TCCTCCACTGCCCCC-GCCGTTCAAAGCAAACTCGTACTCATGCGCCATGgtagtgaatt ... tgtggggcagGCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
gaagttcagggtgccttattattaataggttttttgggaattgtttgtggggcagGCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
tattaat putative branch site (score: 12)
ttattattaataggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcttttttgtgtaggaaaaatgcgtattcggtgcgttagtctgaagttcagggtgccttattattaataggttttttgggaattgtttgtggggcagGCGAAAGCATGTGGAATGACTTGAAGCTGTTCACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT