1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggggagagtttgtcgttttgtagcgctgtgaatcagtttgcgttgttgccaatagccctgcctgaatgattgttgctggcttgcgcgtgggttttcattactttggatgaagttagaagatcttgcttggtgtttttatctttgtgtgtctgtgatggactgacagtgtgtgggatggttggttgtagAAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGGCATTGTGGGGAGGCATTTGGAGGTTGATCTGAATGCAATTGAAATCTGC
species | Physcomitrella patens |
transcript | PP1S9_318V6.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTATACCGCGGATCGTACGTGGTTGAGACTCGCGACGTGAGTTTAG AAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGGEST: gi|18327338|gb|BJ159340.1|BJ159340
genomic: TTGTGTATACCGCGGATCGTACGTGGTTGAGACTCGTGACGTGAGTTTAGgtggggagag ... ttggttgtagAAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGG
EST: TTGTGTATACCGCGGATCGTACGTGGTTGAGACTCGTGACGTGAGTTTAG AAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGG
genomic: TTGTGTATACCGCGGATCGTACGTGGTTGAGACTCGTGACGTGAGTTTAGgtggggagag ... ttggttgtagAAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGG
ttttatctttgtgtgtctgtgatggactgacagtgtgtgggatggttggttgtagAAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGGCATTGTGGGGAGGCATTTGGAGGTTGATCTGAATGCAATTGAAATCTGC
gactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggagagtttgtcgttttgtagcgctgtgaatcagtttgcgttgttgccaatagccctgcctgaatgattgttgctggcttgcgcgtgggttttcattactttggatgaagttagaagatcttgcttggtgtttttatctttgtgtgtctgtgatggactgacagtgtgtgggatggttggttgtagAAAACAGTGTCGCTCGCGAGGAGTTTGAGTTGTGAGTGCTCGGAGATTTGGCATTGTGGGGAGGCATTTGGAGGTTGATCTGAATGCAATTGAAATCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG