1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atggtagtcactgtcttgttctgatctcatcattcctctcggtttcgtcgctaacgatgctccatattgaccttgatgtgtgtttatgttgtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCTATGGCGAAAAGCTATGGAGTTTATACTGACAAAATTGGCGTCAGTTTC
species | Physcomitrella patens |
transcript | PP1S9_26V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAG AGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCEST: gi|18345371|gb|BJ177414.1|BJ177414
genomic: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAGgtagggagct ... gtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGC
EST: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAG AGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCEST: gi|208389727|gb|DC938303.1|DC938303
genomic: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAGgtagggagct ... gtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGC
EST: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAG AGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCEST: gi|18331631|gb|BJ163642.1|BJ163642
genomic: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAGgtagggagct ... gtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGC
EST: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAG AGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGC
genomic: ATCACTTCCGGCGCTTCACGGAATTTTGGACGAGGAGGCTGGATTTCGAGgtagggagct ... gtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGC
cgtcgctaacgatgctccatattgaccttgatgtgtgtttatgttgtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCTATGGCGAAAAGCTATGGAGTTTATACTGACAAAATTGGCGTCAGTTTC
tttatgttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtagtcactgtcttgttctgatctcatcattcctctcggtttcgtcgctaacgatgctccatattgaccttgatgtgtgtttatgttgtaattgcagAGGGAGAGCGAAATAAGCTGATTGCTGTTGAAGTGGCTCGTAATGTGGAGCTATGGCGAAAAGCTATGGAGTTTATACTGACAAAATTGGCGTCAGTTTC
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