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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagattgattacactatttttttaaggacgttgatcaggtgagggatgtaatggtctagggtttaagtggttagtagttgtttggaattgtgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGATGAATCGGAGCGGATGCCGAAACAACTTGTTGAGGCGCTTGGCATTCTC

Basic information

species Physcomitrella patens
transcript PP1S9_243V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360863|gb|BJ192926.1|BJ192926
EST:     TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCG                         ATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
genomic: TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCGgtacgtctgg ... tgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
EST: gi|162192987|gb|FC369903.1|FC369903
EST:     TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCG                         ATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
genomic: TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCGgtacgtctgg ... tgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
EST: gi|162189500|gb|FC365514.1|FC365514
EST:     TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCG                         ATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
genomic: TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCGgtacgtctgg ... tgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
EST: gi|18361637|gb|BJ193703.1|BJ193703
EST:     TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCG                         ATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
genomic: TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCGgtacgtctgg ... tgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
EST: gi|18368538|gb|BJ200623.1|BJ200623
EST:     TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCG                         ATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA
genomic: TTCAGGGAAGAGCGCGACACCTTCGGTCCCATTCAAGTCCCCGATGATCGgtacgtctgg ... tgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaatggtctagggtttaagtggttagtagttgtttggaattgtgatggacagATACTGGGGAGCTCAGACGCAGAGGTCTGTGCAAAACTTTGAGATAGGCGATGAATCGGAGCGGATGCCGAAACAACTTGTTGAGGCGCTTGGCATTCTC
                tttaagt  TA-rich tract