1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttgtagggagaattaataagcgaaaaatgttttagtacctttgcgaatgtccaagctaaattgcttccttgtttgcaatcgatctgttgtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGTTTGGGATGGAAGAGGCGCTCAAAATCGAATGGGTAAACGGCCTCTAGA
species | Physcomitrella patens |
transcript | PP1S79_94V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|100384461|gb|BY987320.1|BY987320
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|18355214|gb|BJ187273.1|BJ187273
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|100422965|gb|BY958088.1|BY958088
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|162214903|gb|FC390463.1|FC390463
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|100387881|gb|BY970626.1|BY970626
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|18360727|gb|BJ192790.1|BJ192790
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|100356058|gb|BY946175.1|BY946175
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|208360015|gb|DC939319.1|DC939319
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGEST: gi|208360201|gb|DC939198.1|DC939198
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
EST: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAG AGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
genomic: CCACGTCTCGCACATCGTATTTGACCTGGATGGCACTCTGCTTGATACAGgtttgcggat ... gtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGG
cgaatgtccaagctaaattgcttccttgtttgcaatcgatctgttgtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGTTTGGGATGGAAGAGGCGCTCAAAATCGAATGGGTAAACGGCCTCTAGA
agctaaa putative branch site (score: 9)
taaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtagggagaattaataagcgaaaaatgttttagtacctttgcgaatgtccaagctaaattgcttccttgtttgcaatcgatctgttgtgggtgaagAGTCGATTGCGGATGAGGTTCTGGCGATAGTACTCACACGCCATGGGAAGGTTTGGGATGGAAGAGGCGCTCAAAATCGAATGGGTAAACGGCCTCTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG