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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctagtgaagaaagaaccgaataacttctctcacacatgtagttgcctgtggttcactgtacgcgtttcacggttttcattctaacctctttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGGCACAG

Basic information

species Physcomitrella patens
transcript PP1S79_2V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100377489|gb|BY986274.1|BY986274
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|22491715|gb|BU051638.1|BU051638
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|67572768|gb|BJ945592.1|BJ945592
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|22492128|gb|BU052051.1|BU052051
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|18346655|gb|BJ178700.1|BJ178700
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|100446638|gb|CJ970937.1|CJ970937
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|100356888|gb|BY965329.1|BY965329
EST:     ATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: ATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|18351003|gb|BJ183054.1|BJ183054
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|162197741|gb|FC374991.1|FC374991
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|100400044|gb|BY990750.1|BY990750
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|162205973|gb|FC382758.1|FC382758
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|18326173|gb|BJ158172.1|BJ158172
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|18355611|gb|BJ187670.1|BJ187670
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAN                         ATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG
EST: gi|18355136|gb|BJ187195.1|BJ187195
EST:     GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAG                         ATATCCACTATCACAGATTTTCCGACTCTGAGAGAAGTCTTCAAATTATGG
genomic: GATTCTAAGCAGTCTTGAACGAGTATCGGTTCATTTTCTTACGGAATTAGgtgagttgcg ... ttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtggttcactgtacgcgtttcacggttttcattctaacctctttcgacgcagATATCCACTATCACAGATTTTCCGACTCTGAGAAAAGTCTTCAAATTATGGCACAG
                                  ttctaac  putative branch site (score: 1)
                                  ttctaacctctttc  CT-rich tract
                            ttttcatt  TA-rich tract