1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcttggaatagcgctgttatattctttgtgtgaaggctgtgattgctcgtttactcgaggtttgtttgtttgtttctcatcgaaacatacgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAGCAATGGCAATGCCACCAAGGAGCTTTCATGGATGGACCGGATGTGCCA
species | Physcomitrella patens |
transcript | PP1S79_233V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTG -G------CA--C--TTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAEST: gi|100452087|gb|CJ975093.1|CJ975093
genomic: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTGgtaagtcact ... acgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
EST: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTG TGATTGAACAGGCACTTCAAAAA-TGGGCCCCAAAGGATACNCAATTAAGAEST: gi|162152650|gb|FC328317.1|FC328317
genomic: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTGgtaagtcact ... acgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
EST: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTG TGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAEST: gi|162207668|gb|FC383545.1|FC383545
genomic: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTGgtaagtcact ... acgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
EST: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTG TGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAEST: gi|100368088|gb|BY948177.1|BY948177
genomic: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTGgtaagtcact ... acgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
EST: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTG TGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
genomic: TCGACGACGTCTCTTTGTTGCAAGTTTACGTCTGCGGAGCGGTAACTTTGgtaagtcact ... acgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGA
tgctcgtttactcgaggtttgtttgtttgtttctcatcgaaacatacgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAGCAATGGCAATGCCACCAAGGAGCTTTCATGGATGGACCGGATGTGCCA
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttggaatagcgctgttatattctttgtgtgaaggctgtgattgctcgtttactcgaggtttgtttgtttgtttctcatcgaaacatacgctggcagTGATTGAACAGGCACTTCAAAAAATGGGCCCCAAAGGATACGCAATTAAGAGCAATGGCAATGCCACCAAGGAGCTTTCATGGATGGACCGGATGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA