1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtgctgggaggtgttttggaggaaaagagaagagtgtgtctgaggaagatgttttaatgatggggggttgtttttttgggttgccctgagatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGTTTAAGGAGGCGTTTAGCTTGTTTGACAAGGATGGCGACG
species | Physcomitrella patens |
transcript | PP1S79_158V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAG GAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGTEST: gi|18343887|gb|BJ175925.1|BJ175925
genomic: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAGgtagttctca ... gatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGT
EST: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAG GAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGTEST: gi|162227832|gb|FC403640.1|FC403640
genomic: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAGgtagttctca ... gatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGT
EST: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAG GAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGT
genomic: TAACCCGTGCAAAGACTGTCATGTAGTGGGATTGGCAGCAGAGCCATCAGgtagttctca ... gatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGT
gaagatgttttaatgatggggggttgtttttttgggttgccctgagatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGTTTAAGGAGGCGTTTAGCTTGTTTGACAAGGATGGCGACG
ttttaat putative branch site (score: 3)
ttttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgctgggaggtgttttggaggaaaagagaagagtgtgtctgaggaagatgttttaatgatggggggttgtttttttgggttgccctgagatactgcagGAAGTCGAGAGATCATGGCGGAGCACTTGACTGAAGAACAGATTGCCGAGTTTAAGGAGGCGTTTAGCTTGTTTGACAAGGATGGCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG