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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcggagggagtggaaacgggggtggtggcgtgattgaggttggtgggggtggtggtgcgcagGGGGAGAAGGAGTGCGCGTATTACATGCGGACGGGGTCTTGCAAGTACGGAGTGACATGCAAATTCCATCATCCACAGCCAGCGACGGTGGGGGGAATGG

Basic information

species Physcomitrella patens
transcript PP1S6_324V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_324V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ05156 (Selaginella moellendorffii), 3'ss of exon 3
-----------------------------------------------------------------------------------------gcggagggagtggaaacgggggtggtggcg--tgattgaggttggtgggggtggtggtgcgcagGGGGAGAAGGAGTGCGCGTATTACATGCGGACGGGGTCTTGCAAGTACGGAGTGACATGCAAATTCCATCATCCACAGCCAGCGACGGTGGGGGGAATGG
                                                                                           |       |||  |      |  |         ||    ||  |     || |    | ||||| ||||| || ||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||| || || || || |||  ||||      ||  
gtaactcatctctccgaaacataatccctagaaaatctctcgcaaaatccctgtcggaagaaactcccgatcactaaaaatacttccgtttgcctttcatggctatcttttttttaattatctgttttttttttttttcttgttctatcacagGGCGAGAAAGAATGCGCGTATTACATGAGAACGGGGTCTTGCAAATACGGAGTGACTTGCAAATTCCACCACCCTCAACCGGCGGTGGTGCCATCCATCT

upper sequence: PP1S6_324V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ05693 (Selaginella moellendorffii), 3'ss of exon 3
--------------------------------------------------------------------------------------------gcggagggagtggaaacgggggtggtggcgtgattgaggttggtgggggtggtggtgcgcagGGGGAGAAGGAGTGCGCGTATTACATGCGGACGGGGTCTTGCAAGTACGGAGTGACATGCAAATTCCATCATCCACAGCCAGCGACGGTGGGGGGAATGG
                                                                                             |       |            |  |    || ||    ||  |     || |    | ||||| ||||| || ||||||||||||||| | || ||||||||||| ||||||||||| ||||||||||| || || || || |||  ||||      ||  
gtaacttatctctccgaaacataacccctagaaaatctctcgcaaaatccctgtcggaagaaactcccgatcactaaaaatacttccgtttgccttttatggctctcttttttttaattatctgtttttc-ttttttttcttgttctatcacagGGCGAGAAAGAATGCGCGTATTACATGAGAACCGGGTCTTGCAAATACGGAGTGACTTGCAAATTCCACCACCCTCAACCGGCGGTGGTGCCATCCATCT