Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18324872|gb|BJ156867.1|BJ156867EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18327863|gb|BJ159867.1|BJ159867EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|100419640|gb|BY957660.1|BY957660EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18356348|gb|BJ188407.1|BJ188407EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|100446089|gb|CJ970388.1|CJ970388EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18327383|gb|BJ159385.1|BJ159385EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18357878|gb|BJ189937.1|BJ189937EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18326615|gb|BJ158614.1|BJ158614EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
EST:
gi|18365797|gb|BJ197875.1|BJ197875EST: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATG GTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
genomic: TCAATCCTTTGCTGCCCAGTGGGCACGGACTCCTCAAGCGCGTCAAGATGgtacgtcgcc ... attcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggtttggcaatgtggtttatgtgctaagattgtggtatggatgtattcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG
tattctt CT-rich tract
tattctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acacttaacttctcctactggggatttgtgaaatggatgcctttagggtttggcaatgtggtttatgtgctaagattgtggtatggatgtattcttacagGTGAAGTTTTCAGCTGAAGAGCTTCGTGCCATTATGGACAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC