1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttgcgtttggtgcataattctttgggtttggtgcaattggtgaggttggaactcgatttttcttgtggatctcaaattttagtttatgtgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTCAAGAGAGCAGTAGGCGAACAGGGATTAAGGGAAGATGGCGTTGAATCC
species | Physcomitrella patens |
transcript | PP1S42_19V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|162176845|gb|FC352833.1|FC352833
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|18349564|gb|BJ181614.1|BJ181614
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|162235107|gb|FC412048.1|FC412048
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100385165|gb|BY987628.1|BY987628
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100387249|gb|BY970393.1|BY970393
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTCTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|162179415|gb|FC355415.1|FC355415
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|208399951|gb|DC904991.1|DC904991
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCCGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100417500|gb|BY975512.1|BY975512
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100409786|gb|BY956104.1|BY956104
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|162199414|gb|FC374054.1|FC374054
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100424379|gb|BY958455.1|BY958455
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACTTATCGAGCCCCCGATTCTGTAACTTAGTEST: gi|100375267|gb|BY948819.1|BY948819
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGT
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTTCTGTA-CTTAGEST: gi|100402902|gb|BY973409.1|BY973409
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATT-CTGTAACTTAG
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGGTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTTCTGTA-CTTTAEST: gi|22132150|gb|BQ827007.1|BQ827007
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATT-CTGTAACTT-A
EST: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAG GGTTTGATCGGAAGTCGTTCACATATC
genomic: GTGTCTGCGTCTCTGTGGATTATGCGGCTGGGTTTATGTGCAGATTTGAGgtgagttgct ... tgattttcagGGTTTGATCGGAAGTCGTTCACATATC
ggttggaactcgatttttcttgtggatctcaaattttagtttatgtgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTCAAGAGAGCAGTAGGCGAACAGGGATTAAGGGAAGATGGCGTTGAATCC
ttttc CT-rich tract
aaattttagtttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcgtttggtgcataattctttgggtttggtgcaattggtgaggttggaactcgatttttcttgtggatctcaaattttagtttatgtgattttcagGGTTTGATCGGAAGTCGTTCACATATCGAGCCCCCGATTCTGTAACTTAGTCAAGAGAGCAGTAGGCGAACAGGGATTAAGGGAAGATGGCGTTGAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG