1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatatgtgaggatcttgatcgactttatcgctgcttggaaggttgttggtcttggtttatactaacagagttatatcatggctttgtattcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG
species | Physcomitrella patens |
transcript | PP1S426_34V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|208371545|gb|DC936266.1|DC936266
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|208355863|gb|DC930226.1|DC930226
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|18366083|gb|BJ198161.1|BJ198161
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|100447366|gb|CJ971665.1|CJ971665
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|100358169|gb|BY965507.1|BY965507
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|208392547|gb|DC933947.1|DC933947
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|162236819|gb|FC412562.1|FC412562
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|162160226|gb|FC337123.1|FC337123
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|208378639|gb|DC903670.1|DC903670
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTEST: gi|208390426|gb|DC933683.1|DC933683
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
EST: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGC CAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
genomic: ATCAAACGGGTGATCCAGTCCCCGTCGCTCGAAGAGGCCAATTCCACGGCgtaagtttat ... tcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGT
gttggtcttggtttatactaacagagttatatcatggctttgtattcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG
tactaac putative branch site (score: 3)
tttatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatatgtgaggatcttgatcgactttatcgctgcttggaaggttgttggtcttggtttatactaacagagttatatcatggctttgtattcaacaacagCAAACTACATCGTGGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA