1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtagccttggattagactgcagaagaaatttgttatcttttctttgagtatttagttttgcttttgagtcattcaaaatggaccttgtgtatccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGGTATTTGTGCCTCCCATGCATCAGGACAACTGGAACAATCTGTCGTTGG
species | Physcomitrella patens |
transcript | PP1S403_8V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGEST: gi|162192199|gb|FC367724.1|FC367724
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGEST: gi|67702590|gb|BJ962823.1|BJ962823
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGEST: gi|162165129|gb|FC341137.1|FC341137
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGEST: gi|100364859|gb|BY947943.1|BY947943
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGEST: gi|208389211|gb|DC933239.1|DC933239
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
EST: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCG AAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
genomic: ACAGCAGCGGCGATGCTGCGCTGCGGTTATCGAAGCCGGCCTCGCAGCCGgtgagtgtag ... atccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGG
gagtatttagttttgcttttgagtcattcaaaatggaccttgtgtatccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGGTATTTGTGCCTCCCATGCATCAGGACAACTGGAACAATCTGTCGTTGG
tatcctt CT-rich tract
tttagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccttggattagactgcagaagaaatttgttatcttttctttgagtatttagttttgcttttgagtcattcaaaatggaccttgtgtatccttacagAAACATATCGTTGCAAATTCTTCGACAAATTCTGTTTCTTCGAAGGGGAGGGTATTTGTGCCTCCCATGCATCAGGACAACTGGAACAATCTGTCGTTGG
- - - - - - - - ctgcaga