1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggaatttttcaccgaaaatcagttcacctgttcgtcgtttgaattgcatggaattgtttctggtagcacaagatgatctggttgtgttgttgatgaaccgtaagttgaccggttgtatcattgttctcttcagGTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGACCGGATGATCATTCAAGTTCTGGATGATTCTACGGATCAGACCATCAGG
species | Physcomitrella patens |
transcript | PP1S36_214V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGTTTCCTATGGTGCTGGTGCAGATTCCTATGTTTAACGAGCGTGAG GTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGACEST: gi|162256426|gb|FC432457.1|FC432457
genomic: CGGCGTTTCCTATGGTGCTGGTGCAGATTCCTATGTTTAACGAGCGTGAGgtggaatttt ... ttctcttcagGTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGAC
EST: GGTGCAGATTCCTATGTTTAACGAGCGTGAG GTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGAC
genomic: GGTGCAGATTCCTATGTTTAACGAGCGTGAGgtggaatttt ... ttctcttcagGTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGAC
tggttgtgttgttgatgaaccgtaagttgaccggttgtatcattgttctcttcagGTGTACCAACTGTCCATACAGGCGGCGTGTGGATTGTCATGGCCTGGAGACCGGATGATCATTCAAGTTCTGGATGATTCTACGGATCAGACCATCAGG
agttgac putative branch site (score: 9)
tcattgttctcttc putative PPT
tatcatt TA-rich tract