Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcaaaaattgtgtcgtgttactgtgataatttttgaaagtttcgttgtcgtcctgcatcgactcttacggatatgggttgatcgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA

Basic information

species Physcomitrella patens
transcript PP1S369_6V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S369_6V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ08434 (Selaginella moellendorffii), 3'ss of exon 1
cgcaaaaattgtgtcgtgttactgtgataatttttgaaagtttcgttgtcgtcctgcatcgactcttacggatatgggttgat----cgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA
                   ||||   | ||| | |      ||  |  || |||||    | |   | || | |||  ||  |    |   |||||  | ||||| |||||||| |||||||||||  |||| |||||| | ||||| || || |||||  |||| ||||| |||||||| || ||||| |||||||| || ||
------------------gtactcaaaaaatctcttttttcttgctgctcttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttttctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA

upper sequence: PP1S369_6V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ15151 (Selaginella moellendorffii), 3'ss of exon 1
cgcaaaaattgtgtcgtgttactgtgataatttttgaaagtttcgttgtcgtcctgcatcgactcttacggatatgggttgat----cgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA
                   ||||  || || | |       ||  |  || |||||    | |   | || | |||  ||  |    |   ||||   | ||||| |||||||| |||||||||||  |||| |||||| | ||||| || || |||||  |||| ||||| |||||||| || ||||| |||||||| || ||
------------------gtactcagaaaaatctctttttcttgctgctcttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162233117|gb|FC408940.1|FC408940
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100405859|gb|BY973890.1|BY973890
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162150220|gb|FC326305.1|FC326305
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18375269|gb|BJ206847.1|BJ206847
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18357070|gb|BJ189129.1|BJ189129
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162165725|gb|FC341205.1|FC341205
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162250628|gb|FC428219.1|FC428219
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100443121|gb|BY981747.1|BY981747
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|208364263|gb|DC935534.1|DC935534
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162232508|gb|FC408370.1|FC408370
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|208377906|gb|DC910938.1|DC910938
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18347411|gb|BJ179457.1|BJ179457
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100418319|gb|BY957362.1|BY957362
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100407975|gb|BY955861.1|BY955861
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGNGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100364699|gb|BY947864.1|BY947864
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100383790|gb|BY969319.1|BY969319
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18354051|gb|BJ186106.1|BJ186106
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|208345336|gb|DC912953.1|DC912953
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162165449|gb|FC342016.1|FC342016
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18364309|gb|BJ196382.1|BJ196382
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100369480|gb|BY948114.1|BY948114
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18352564|gb|BJ184618.1|BJ184618
EST:     GAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: GAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTT-CCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100409319|gb|BY991952.1|BY991952
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162173196|gb|FC349250.1|FC349250
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162175178|gb|FC352013.1|FC352013
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100445540|gb|CJ975689.1|CJ975689
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162226576|gb|FC403609.1|FC403609
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100356781|gb|BY965277.1|BY965277
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162189965|gb|FC366136.1|FC366136
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18358399|gb|BJ190458.1|BJ190458
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100428318|gb|BY977743.1|BY977743
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|208351745|gb|DC913702.1|DC913702
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGCGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18355050|gb|BJ187109.1|BJ187109
EST:     GAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: GAGATCTTCCGCACCAAAACTGCAACTTCCTTCA-TTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18371561|gb|BJ203163.1|BJ203163
EST:     AGATATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162227235|gb|FC402852.1|FC402852
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162203566|gb|FC379052.1|FC379052
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100443566|gb|BY981993.1|BY981993
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18362173|gb|BJ194241.1|BJ194241
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162201059|gb|FC378190.1|FC378190
EST:     GCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: GCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100384930|gb|BY969665.1|BY969665
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162158620|gb|FC335520.1|FC335520
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162192100|gb|FC368249.1|FC368249
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162226754|gb|FC402786.1|FC402786
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100402878|gb|BY973397.1|BY973397
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100443091|gb|BY981717.1|BY981717
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|67571331|gb|BJ944155.1|BJ944155
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162189667|gb|FC366305.1|FC366305
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18367661|gb|BJ199744.1|BJ199744
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100450408|gb|CJ974248.1|CJ974248
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162278527|gb|FC453989.1|FC453989
EST:     CTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: CTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162266616|gb|FC441989.1|FC441989
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18366379|gb|BJ198458.1|BJ198458
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|67712775|gb|BJ966224.1|BJ966224
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162179794|gb|FC356385.1|FC356385
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18355534|gb|BJ187593.1|BJ187593
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162255308|gb|FC432034.1|FC432034
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100444310|gb|BY982339.1|BY982339
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100386337|gb|BY988004.1|BY988004
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100405270|gb|BY955441.1|BY955441
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162169377|gb|FC345733.1|FC345733
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18331698|gb|BJ163709.1|BJ163709
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100397406|gb|BY972483.1|BY972483
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18326414|gb|BJ158413.1|BJ158413
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|162233558|gb|FC410940.1|FC410940
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100352372|gb|BY983175.1|BY983175
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|100352777|gb|BY945443.1|BY945443
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|208344817|gb|DC912651.1|DC912651
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
EST: gi|18325698|gb|BJ157695.1|BJ157695
EST:     AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAG                         GTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA
genomic: AGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 132

CGCTCCCCCGCTTTCCCCAAGCTCTCCAAATCCGTCATTGACGATGTGAAAGAGATCTTCCGCACCAAAACTGCAACTTCCTTCATTTTTCCTACCACAGgtatgatcaa ... ttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcgtcctgcatcgactcttacggatatgggttgatcgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA
                                          tttttcgt  CT-rich tract
                                        aattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgcaaaaattgtgtcgtgttactgtgataatttttgaaagtttcgttgtcgtcctgcatcgactcttacggatatgggttgatcgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca