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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcaatggggtggccgaattgaatgtgttctaattctgtttctgtctctcatgaatgggagcttggagcatgaactgcgtcacattttgagcattatagttttggtttggtgttggaattttttcattgagttttggatgtgcttggtttttgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGCTCAAGGTCGCCATTATTGGCGCTGGTCTTGCGGGCATGTCCACCGCTGT

Basic information

species Physcomitrella patens
transcript PP1S277_10V6.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S277_10V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G454952_T01 (Zea mays), 3'ss of exon 1
gtgtgcaatggggtggccgaattgaatgtgttctaattctgtttctgtctctcatgaatgggagcttggagcatgaactgcgtcacattttgagcattatagttttggtttgg-tgttggaattttttcattgag----ttttggat---gtgcttggtttttgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGCTCAAGGTCGCCATTATTGGCGCTGGTCTTGCGGGCATGTCCACCGCTGT
                                                                           |  |  ||  | |||| |  ||  |  | || |||    ||    | |   | ||   ||    |  || |    |  ||   |  ||| ||  |||| || |||||  | ||||| |||||||| |||   |||| ||| || ||||||||||| ||||| || || || || |||||||||||||||||||||||
------------------------------------------------------------------------gccagttctgttccgttttaaatatctttatgttcgttcaaatgccatattgactgcaaaaaggaaatgctgaaacgagaactacttccttgtgtgccagCTCCCAAAGGGTTATTCCCACCCGAGCCAGAGCACTACAGGGGCCCGAAGCTCAAGGTGGCCATCATAGGGGCAGGCCTTGCGGGCATGTCCACCGCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389821|gb|BY971173.1|BY971173
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100447940|gb|CJ972239.1|CJ972239
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162172589|gb|FC349362.1|FC349362
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100352075|gb|BY964693.1|BY964693
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGNGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18329728|gb|BJ161734.1|BJ161734
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100443131|gb|BY981757.1|BY981757
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100393148|gb|BY989767.1|BY989767
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGTGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18359480|gb|BJ191541.1|BJ191541
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100396902|gb|BY953885.1|BY953885
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|208399548|gb|DC908545.1|DC908545
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100424082|gb|BY976656.1|BY976656
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100423760|gb|BY976531.1|BY976531
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18327350|gb|BJ159352.1|BJ159352
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18369097|gb|BJ201182.1|BJ201182
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGANCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGANCCCGANGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|208351706|gb|DC910066.1|DC910066
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100367017|gb|BY948326.1|BY948326
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100440953|gb|BY962441.1|BY962441
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162167140|gb|FC343616.1|FC343616
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100376253|gb|BY986096.1|BY986096
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162159709|gb|FC336095.1|FC336095
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162167477|gb|FC344194.1|FC344194
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|208349541|gb|DC905651.1|DC905651
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100390582|gb|BY971337.1|BY971337
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100387464|gb|BY988335.1|BY988335
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|208397089|gb|DC908103.1|DC908103
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162170376|gb|FC346781.1|FC346781
EST:     GGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18326472|gb|BJ158471.1|BJ158471
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|162267926|gb|FC444007.1|FC444007
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18353019|gb|BJ185074.1|BJ185074
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18367243|gb|BJ199324.1|BJ199324
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100450706|gb|CJ974398.1|CJ974398
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18374015|gb|BJ205593.1|BJ205593
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100443101|gb|BY981727.1|BY981727
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18325065|gb|BJ157061.1|BJ157061
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|18371251|gb|BJ202853.1|BJ202853
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
EST: gi|100379426|gb|BY986631.1|BY986631
EST:     GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAG                         CACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC
genomic: GCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 35 (downstream exon)
Score: 25

TTTGCAGTTGTGGACCGAAAGGATGCCAGCAGCAGACGGACAGGGAGTGTGCGCGTCACAGCCAGCTTGCAAAGCATGGTGTCGGACATGAGCAGGAAAGgtgtgcaatg ... tgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGCTCAAGGTCGCCATTATTGGCGCTGGTCTTGCGGGCATGTCCACCGCTGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgttggaattttttcattgagttttggatgtgcttggtttttgggtttcagCACCGAAAGGTCTGTTCCCTCCCGAGCCCGAGGCTTACAAGGGGCCCAAGCTCAAGGTCGCCATTATTGGCGCTGGTCTTGCGGGCATGTCCACCGCTGT
                                         ttttt  CT-rich tract
          aattttttcattga  TA-rich tract