1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgtgtgagcgtgattgtggttacaagttgcggaatggtttgtgttttttcttttcttttcatgcgtgtgttttatagttagttgaaactgttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG
species | Physcomitrella patens |
transcript | PP1S18_19V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|15261911|gb|BI437221.1|BI437221
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|162250643|gb|FC428234.1|FC428234
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|67508436|gb|BJ941303.1|BJ941303
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|18347569|gb|BJ179616.1|BJ179616
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|162213505|gb|FC389377.1|FC389377
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|18366809|gb|BJ198888.1|BJ198888
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGEST: gi|162213504|gb|FC389376.1|FC389376
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
EST: AGCTCCAGNNNNNNNTTGGGTTCGTCTACCAGATCAACATTGCTCCCAAG AAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
genomic: AGCTCCAGAAAAAAATTGGGTTCGTCTACCAGATCAACATTGCTCCCAAGgtttgtattc ... gttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAG
tttttcttttcttttcatgcgtgtgttttatagttagttgaaactgttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG
tgttgat putative branch site (score: 20)
ttttatagttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgagcgtgattgtggttacaagttgcggaatggtttgtgttttttcttttcttttcatgcgtgtgttttatagttagttgaaactgttgatgcagAAAATCGGTTTTGAAGAGGAAATCTTCGTGGTTGACCTCAAGAACTTGAAGGTTTACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG