1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgggggttggcagtagagtagtcagttgtaagggagacggttctttgaatgtctgtttgggactgactgagtgggttttgggtacggatttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACGAGGCGATTATTGTGATGGATGCAACAGCGGCATCATTTGTGAGAGCTG
species | Physcomitrella patens |
transcript | PP1S166_97V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|18352147|gb|BJ184201.1|BJ184201
genomic: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: GTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|18353291|gb|BJ185346.1|BJ185346
genomic: GTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: GTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|18373663|gb|BJ205241.1|BJ205241
genomic: GTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|18360580|gb|BJ192643.1|BJ192643
genomic: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|18372031|gb|BJ203633.1|BJ203633
genomic: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACEST: gi|67717103|gb|BJ967362.1|BJ967362
genomic: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
EST: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGG TCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
genomic: TCGTCGTGTCTTTCTTACTCCCACATCGTCAACTTCTTCCGAATTGCCGGgtgggtgttc ... ttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAAC
ttgaatgtctgtttgggactgactgagtgggttttgggtacggatttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACGAGGCGATTATTGTGATGGATGCAACAGCGGCATCATTTGTGAGAGCTG
gactgac putative branch site (score: 11)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggggttggcagtagagtagtcagttgtaagggagacggttctttgaatgtctgtttgggactgactgagtgggttttgggtacggatttggacacagTCAGCCAAGAAGTGATTGAGCGGGCTGAGTGAGGAGAGTGGGGCAGGGAACGAGGCGATTATTGTGATGGATGCAACAGCGGCATCATTTGTGAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT