1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaactgcaaaaataagttcggtcatgagcagtgaatgtatggcgttatgtagattggtattcagtggtgtgggagctaacgaggacgttggacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGAAAGCGCTAGCAGGTGAACTCAATGCTGCACCCAAGTACAGGGGAATGT
species | Physcomitrella patens |
transcript | PP1S15_443V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGEST: gi|162262932|gb|FC439299.1|FC439299
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGEST: gi|18356847|gb|BJ188906.1|BJ188906
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGEST: gi|162268961|gb|FC445765.1|FC445765
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGEST: gi|18326905|gb|BJ158905.1|BJ158905
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGEST: gi|100449339|gb|CJ973638.1|CJ973638
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
EST: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAG ACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
genomic: CACTTTATGGCACTTTCGCTGCGTCTGCATTCAGCGCTTGTTGGGCCGAGgtgctagcac ... gacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGG
tatgtagattggtattcagtggtgtgggagctaacgaggacgttggacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGAAAGCGCTAGCAGGTGAACTCAATGCTGCACCCAAGTACAGGGGAATGT
agctaac putative branch site (score: 8)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactgcaaaaataagttcggtcatgagcagtgaatgtatggcgttatgtagattggtattcagtggtgtgggagctaacgaggacgttggacatggcagACTTGTACAATCCCTCTAGATACGGCCAAAGTGAGGTTGCAGCTGCAAGGGAAAGCGCTAGCAGGTGAACTCAATGCTGCACCCAAGTACAGGGGAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -ctgcaaa