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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgttcaagtaagatcctgtattcactgatatgagacttgatgattttagcgctctgtgattgcagtccggtgatgactcgaatatggttgtttctcagGTTCCAGGTGAAGAAGAAGGAGTTCTTTCGGAATTTTATTGCTATCATGTTATTCGGAGTCATCGGAGTCTTCATTTCTTTCGCAGTTATTTCAACAG

Basic information

species Physcomitrella patens
transcript PP1S113_117V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S113_117V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G027851_T01 (Zea mays), 3'ss of exon 2
attgttcaagtaagatcctgtattcactgatatgagacttgatgattttagcgctctgtgat-tgcagtccgg-tgatgactcgaatatggttgtttc-tcagGTTCCAGGTGAAGAAGAAGGAGTTCTTTCGGAATTTTATTGCTATCATGTTATTCGGAGTCATCGGAGTCTTCATTTCTTTCGCAGTTATTTCAACAG
        | | |  |  || || ||        |  | |  |  ||| |    ||| |||  |  | ||  | |  | ||     | |  |    ||  |||||||||||||||||||||  ||||||| |||||||| ||  | ||||   ||||||| |   | ||     | || || |||      || ||    |
---aactgaatgatctgttgaatccatgacgccaatcccttctagtttgatacttctttgacgtataatcaagattctcacagacgtttcctcacctcaccagGTTCCAGGTGAAGAAGAAACAGTTCTTCCGGAATTTCATGACAATCACACTATTCGGTGCTGTTGGCACAATGATATCCTTCTTCACAATCTCTCTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagcgctctgtgattgcagtccggtgatgactcgaatatggttgtttctcagGTTCCAGGTGAAGAAGAAGGAGTTCTTTCGGAATTTTATTGCTATCATGTTATTCGGAGTCATCGGAGTCTTCATTTCTTTCGCAGTTATTTCAACAG
                                            ttgtttctc  CT-rich tract
                                     aatat  TA-rich tract