Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcgggtggacggggtgaggtagcaacattctgatgtgaattagggttgtgaaacgaatgtactctagtatctcatattttttaactgtcttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTATGCTGGTGTGTCCACCAACAACTACTCCCCTGATGAGCTTGAGCAGTCTG

Basic information

species Physcomitrella patens
transcript PP1S101_2V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162236169|gb|FC411145.1|FC411145
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|208395352|gb|DC919942.1|DC919942
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162224309|gb|FC400153.1|FC400153
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|18332382|gb|BJ164395.1|BJ164395
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162204999|gb|FC380681.1|FC380681
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162210716|gb|FC386612.1|FC386612
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162168927|gb|FC345401.1|FC345401
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162223054|gb|FC399659.1|FC399659
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|18369352|gb|BJ201438.1|BJ201438
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162217496|gb|FC393172.1|FC393172
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|37824579|gb|BJ582645.1|BJ582645
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162231622|gb|FC407617.1|FC407617
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162236170|gb|FC411146.1|FC411146
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|208394466|gb|DC928518.1|DC928518
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|7047418|gb|AW477312.1|AW477312
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCANGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|19778051|gb|BQ039249.1|BQ039249
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGGTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGATAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162249222|gb|FC421240.1|FC421240
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162246489|gb|FC419973.1|FC419973
EST:     TTGTCGCCGCTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTA
genomic: TTGTCGCCG-TTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTA
EST: gi|162217495|gb|FC393171.1|FC393171
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|18341725|gb|BJ173760.1|BJ173760
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|18342940|gb|BJ174976.1|BJ174976
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162204998|gb|FC380680.1|FC380680
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162243380|gb|FC417081.1|FC417081
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162253874|gb|FC430573.1|FC430573
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162212879|gb|FC388887.1|FC388887
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|19789116|gb|BQ041106.1|BQ041106
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162249407|gb|FC424870.1|FC424870
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162232945|gb|FC407858.1|FC407858
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|37822085|gb|BJ580151.1|BJ580151
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162253822|gb|FC430547.1|FC430547
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162210162|gb|FC386686.1|FC386686
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162204884|gb|FC381202.1|FC381202
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|19790139|gb|BQ041712.1|BQ041712
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162210717|gb|FC386613.1|FC386613
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162223055|gb|FC399660.1|FC399660
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162222094|gb|FC397322.1|FC397322
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162253202|gb|FC429138.1|FC429138
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162204885|gb|FC381203.1|FC381203
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|7207360|gb|AW561363.1|AW561363
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATGTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162189467|gb|FC365481.1|FC365481
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|67726899|gb|BJ977158.1|BJ977158
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162218157|gb|FC394175.1|FC394175
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162218553|gb|FC395130.1|FC395130
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162210163|gb|FC386687.1|FC386687
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162266052|gb|FC442737.1|FC442737
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|19784536|gb|BQ040191.1|BQ040191
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|208350351|gb|DC906053.1|DC906053
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162226766|gb|FC403812.1|FC403812
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|67699707|gb|BJ959940.1|BJ959940
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162218554|gb|FC395131.1|FC395131
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162232946|gb|FC407859.1|FC407859
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|208382065|gb|DC914768.1|DC914768
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
EST: gi|162219971|gb|FC396786.1|FC396786
EST:     GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAG                         GCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT
genomic: GAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 134

CCAGCCTGTCATTGGACCTAAGAGGGGCAGCATTGTGAAGGTTCTCAGGCGAGAGTCATACTGGTTCAACGACACAGGCAAGGTTGTCGCCGTTGATCAGgtgagtcttc ... ttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTATGCTGGTGTGTCCACCAACAACTACTCCCCTGATGAGCTTGAGCAGTCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgaaacgaatgtactctagtatctcatattttttaactgtcttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTATGCTGGTGTGTCCACCAACAACTACTCCCCTGATGAGCTTGAGCAGTCTG
                                        ctgtctt  CT-rich tract
                       tatctcatatttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcgggtggacggggtgaggtagcaacattctgatgtgaattagggttgtgaaacgaatgtactctagtatctcatattttttaactgtcttgactgcagGCACCAGGAGTAAGATATCCCGTAGTTGTGAGATTTGATAAAGTTAACTATGCTGGTGTGTCCACCAACAACTACTCCCCTGATGAGCTTGAGCAGTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG