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gtaggagactgttttcagataaaaagaattatcgtgttctgactgccggctaagaacttctcattatcttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCACCAATCCGCAATTGAGATATCAAAGAACCGTGGCGTGCTATTATCAGA
species | Oryza sativa |
transcript | LOC_Os12g40550.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|29676280|gb|CB672555.1|CB672555
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|2311967|gb|C28122.1|C28122
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|29665068|gb|CB661343.1|CB661343
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|38471018|gb|CF955149.1|CF955149
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|29625973|gb|CB630984.1|CB630984
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|27578088|gb|CB000783.1|CB000783
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCEST: gi|58682834|gb|CK071521.1|CK071521
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
EST: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG ATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
genomic: ACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTGgtaggagact ... ttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTC
aagaattatcgtgttctgactgccggctaagaacttctcattatcttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCACCAATCCGCAATTGAGATATCAAAGAACCGTGGCGTGCTATTATCAGA
ttctgac putative branch site (score: 9)
cttctcattatctttt putative PPT
attatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagactgttttcagataaaaagaattatcgtgttctgactgccggctaagaacttctcattatcttttgtacagATGTGAGAGACATTGATGAGAAGAGGAGGAATAATGTCATTGAGAAGGTTCACCAATCCGCAATTGAGATATCAAAGAACCGTGGCGTGCTATTATCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC