1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cacatgtttttataatttacagaagaatttctggaagaatgcctgatgcattcatggaggactttattaactgacagcctctaatttgcttaaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA
species | Oryza sativa |
transcript | LOC_Os12g15470.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|58609188|gb|CK037221.1|CK037221
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: GGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAAGAACGATGACGTCAGAGCAGCAEST: gi|29638179|gb|CB643188.1|CB643188
genomic: GGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|33684071|gb|CF312310.1|CF312310
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|29644492|gb|CB649499.1|CB649499
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|29668082|gb|CB664357.1|CB664357
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|29661783|gb|CB658058.1|CB658058
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|29659837|gb|CB656112.1|CB656112
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: AGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTTCCTTGTATG AGTGATGAAGTGGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|29661784|gb|CB658059.1|CB658059
genomic: AGTTTGCCAGAGGATCTCGCCCCAGTGGAG-TTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAEST: gi|86905526|gb|CI285489.1|CI285489
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCA
EST: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATG AGTGATGAAGTTGCAACAGCATGGCTGAACAAC
genomic: CCTGGCAGGAGTTTGCCAGAGGATCTCGCCCCAGTGGAGTTCCTTGTATGgtaagctcaa ... taaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAAC
atgcattcatggaggactttattaactgacagcctctaatttgcttaaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA
tttgctt CT-rich tract
actttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatgtttttataatttacagaagaatttctggaagaatgcctgatgcattcatggaggactttattaactgacagcctctaatttgcttaaactgcagAGTGATGAAGTTGCAACAGCATGGCTGAACAACGATGACGTCAGAGCAGCAATTCATGCCCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-acatgtt
- - - - - - - - - -cagaagaa
- - - - - - - - - - - - - - - - - - - atgcctg
- - - - - - - - - - - - - - - - - - - - - - - tgcattc