1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtggtcccttatcccaaactccttaatttctgatagttcttccactctgcggtagattcccatgctaagcttctgaatgcattctcaatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAGAGGTTTTGGGATTCTACTCTTGCTTTGGAGTCTCCTGATGAGGAATGCG
species | Oryza sativa |
transcript | LOC_Os12g07190.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTG GTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAGEST: gi|29683887|gb|CB680162.1|CB680162
genomic: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTGgtggtccctt ... caatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAG
EST: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTG GTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAGEST: gi|33799726|gb|CF325729.1|CF325729
genomic: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTGgtggtccctt ... caatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAG
EST: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTG GTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAG
genomic: TTGCTGCTTGCTTGGATGTCCTGCAACTTACCCACGCAGCCATTCAATTGgtggtccctt ... caatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAG
tccactctgcggtagattcccatgctaagcttctgaatgcattctcaatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAGAGGTTTTGGGATTCTACTCTTGCTTTGGAGTCTCCTGATGAGGAATGCG
cattctc CT-rich tract
aatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtcccttatcccaaactccttaatttctgatagttcttccactctgcggtagattcccatgctaagcttctgaatgcattctcaatttgtagGTTGAAGGAGGAAATGACACTGTAAATGATGTGGCAAATACAGTAATGCAGAGGTTTTGGGATTCTACTCTTGCTTTGGAGTCTCCTGATGAGGAATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG