Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttgggatttatactgcctcaagagttgcattaattgttcaatagatttgtccatgttattgactgctctgttgctattttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG
Basic information
species | Oryza sativa |
transcript | LOC_Os11g33240.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os11g33240.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G064023_T01 (Zea mays), 3'ss of exon 11
gtatgcttgggatttatactgcctcaagagttgcattaattgttcaatagat-ttgtccatgttattgactgctctgttgctattttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG
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gtaaacttgggatttgtactgtcac-----tcattttatgtgttcagtggttgctttccatggtgttca-----caattattgtttgtatagGTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG
upper sequence: LOC_Os11g33240.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G063851_T01 (Zea mays), 3'ss of exon 11
gtatgcttgggatttatactgcctcaagagttgcattaattgttcaatagat-ttgtccatgttattgactgctctgttgctattttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG
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gtaaacttgggatttgtactgcctccca--ttttcttatgtgttcagtggttgctttctatggtggtca-----aaattattgtttgtatagGTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAG
upper sequence: LOC_Os11g33240.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G063909_T02 (Zea mays), 3'ss of exon 9
gtatgcttgggatttatactgcctcaagagttgcattaattgttcaatagat-ttgtccatgttattgactgctctgttgctattttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG
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gtaaacttgggatt----ccaccc-----attttcttaagtgttcagtggttgcttttcatggtgttca-----caattattgtttgtatagGCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38470398|gb|CF954529.1|CF954529EST: GTTGAGAGTGAGTTTCAAAAAGCTTACGACAAAGGAATGCCAAAATCAAA GTTCTGGGAGCCTACCTATAAAGATAGCTTAAATTTGATAGCTCGCCTTCC
genomic: GTTGAGAGTGAGTTTCAAAAAGCTTACGACAAAGGAATGCCAAAATCAAAgtatgcttgg ... attttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattgttcaatagatttgtccatgttattgactgctctgttgctattttaatagGTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG
tattgac putative branch site (score: 2)
ctatttt putative PPT
ttgctattttaata TA-rich tract