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gtcagtaaatactgggcatttgtgatttgaatctgtgtagttgtcctaaatgagggatgtgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCA-GCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGC-AACTTAEST: gi|58675082|gb|CK063769.1|CK063769
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|428132|gb|D24280.1|D24280
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCNAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|58692466|gb|CK081153.1|CK081153
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|58663314|gb|CK052000.1|CK052000
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|568031|gb|D38866.1|D38866
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|86851054|gb|CI311272.1|CI311272
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|163928826|gb|EG709729.1|EG709729
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTAEST: gi|33796275|gb|CF324004.1|CF324004
genomic: GCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
EST: GAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAG GTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
genomic: GAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCATCAAGgtcagtaaat ... tgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTA
ggcatttgtgatttgaatctgtgtagttgtcctaaatgagggatgtgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA
tcctaaa putative branch site (score: 116)
atttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaaatactgggcatttgtgatttgaatctgtgtagttgtcctaaatgagggatgtgttgttcagGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAGGACCTTGCGATCCTTACTGGAGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA