Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgaatctattagagcgaaaccatttagcatttacctgtggccttgaattggttggtgattttctgtaagcagtaatttgactgacatcctaatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG

Basic information

species Oryza sativa
transcript LOC_Os09g26880.4
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g26880.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM5G820733_T02 (Zea mays), 3'ss of exon 2
gtgaatctattagagcgaaaccatttagcatttacctgtggccttgaattggttggtgattttctgtaagcagt--aatttgactgacat--cctaatttg-------cagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG
     |  |||  ||  |||   | |  ||  ||  | |  ||| ||    ||   | ||||| ||||||| ||  ||||  |   | ||    | |  ||       ||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| || ||||||||| |||||||| |||  |||||||| ||||||| ||
-----tgcattgaagtaaaa---tgtgacaagtattttta-cctggaggaagt--attattttatgtaagccgttaaattctaacaatataatttgacatgttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTATGGAAATTACACGTTCTGCACCAGTTGTGAAAG

upper sequence: LOC_Os09g26880.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G070514_T02 (Zea mays), 3'ss of exon 3
------gtgaatctattagagcgaaaccatttagcatttacctgtggccttgaattggttggtgattttctgtaagcagtaatttgactgacatcctaatttg------------cagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG
          ||  |||  ||  |||   | |  ||  ||  | |  ||| ||    ||   | | ||| ||||||| || |  || || |||   |||||||            ||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| || |||||||||||||||||| |||  |||||||| ||||||| ||
gtaaaaagatatgcattgaagtaaaa---tgtgacaagtattttta-cctggaggaagt--attactttatgtaagccgttaaatg-ctaacaatataatttgacatgttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAG

upper sequence: LOC_Os09g26880.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G130440_T02 (Zea mays), 3'ss of exon 10
gtgaatctattagagcgaaac-catttagcattt--acctgtggccttgaattggttggtgattttctgtaagc---agtaatttgact-gacatcctaatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG
     |  |||  ||  |||       || ||||  |||||  |    | |||  ||  ||     |  |||     |  ||| | | | |||||  |  | | ||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| || |||||||||||||||||| |||| |||||||| ||||||| ||
-----tgcattgaagtaaaatgtgacaagtatttttacctggaggaa-gtattactttatgtaagccgttaaattctaacaatataatttgacatgttt-tattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACCTTCTGCACCAGTTGTGAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33364555|gb|BP432941.1|BP432941
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29669203|gb|CB665478.1|CB665478
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAGAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29655856|gb|CB652131.1|CB652131
EST:     GAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29674835|gb|CB671110.1|CB671110
EST:     GAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29638872|gb|CB643881.1|CB643881
EST:     CCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29665769|gb|CB662044.1|CB662044
EST:     GAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29668604|gb|CB664879.1|CB664879
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29619465|gb|CB624477.1|CB624477
EST:     CTGCTTCAAAAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29617472|gb|CB622484.1|CB622484
EST:     GAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29670275|gb|CB666550.1|CB666550
EST:     CATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|58695697|gb|CK084384.1|CK084384
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29663938|gb|CB660213.1|CB660213
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|88571108|gb|CI662481.1|CI662481
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29629464|gb|CB634473.1|CB634473
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29656048|gb|CB652323.1|CB652323
EST:     AAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: AAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29639263|gb|CB644272.1|CB644272
EST:     AAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: AAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29673830|gb|CB670105.1|CB670105
EST:     TCAAGAGACGCCTTC-TGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: TCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29613124|gb|CB618137.1|CB618137
EST:     CTGCTTCAAAAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29663977|gb|CB660252.1|CB660252
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29628533|gb|CB633544.1|CB633544
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|66920685|gb|CX107533.1|CX107533
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29677489|gb|CB673764.1|CB673764
EST:     NTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29668647|gb|CB664922.1|CB664922
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29656046|gb|CB652321.1|CB652321
EST:     GAAAGGCATCCAAACCATCAGATTTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29668563|gb|CB664838.1|CB664838
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAT                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGANGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29668605|gb|CB664880.1|CB664880
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29667911|gb|CB664186.1|CB664186
EST:     CTGCTTCAAGAGACGCTTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29623916|gb|CB628927.1|CB628927
EST:     AAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: AAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29667685|gb|CB663960.1|CB663960
EST:     CTGCTTCAAGAGACGCTTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29633228|gb|CB638237.1|CB638237
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAAATTCTTTATGGANGGATCTGCAATTGAATCT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGG-AAAAATTCTTTATGGA-GGATCTGCAATTGAATCT
EST: gi|29628522|gb|CB633533.1|CB633533
EST:     AGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: AGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29664485|gb|CB660760.1|CB660760
EST:     TCAAAAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: TCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|88307624|gb|CI644660.1|CI644660
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29673253|gb|CB669528.1|CB669528
EST:     CAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29672296|gb|CB668571.1|CB668571
EST:     GAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: GAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|29668614|gb|CB664889.1|CB664889
EST:     AAGGCATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: AAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
EST: gi|58604471|gb|CK014999.1|CK014999
EST:     CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAN                         NNNNNNAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAG
genomic: CTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAG
EST: gi|29663939|gb|CB660214.1|CB660214
EST:     CATCCAAACCATCAGATCTCAG                         GGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT
genomic: CATCCAAACCATCAGATCTCAGgtgatattat ... taatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattggttggtgattttctgtaagcagtaatttgactgacatcctaatttgcagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG
                                          tcctaat  putative branch site (score: 2)
                          agtaattt  TA-rich tract