1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gattgcataatctcatgtagatatgaattatcttgacacaaccaacatccctgataatttgggggtatgctcgtccaatgatgtttccgcttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTGGCCACGCGACTCGGCTCACCGTGGATGATCTGAAGTATCTATTTAGGT
species | Oryza sativa |
transcript | LOC_Os08g08220.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAG GAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTEST: gi|86840262|gb|CI342488.1|CI342488
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
EST: CCCGTTTAACCATTAAAGATACGTTGGAAGATCGCATTTTAGCTCTGCAG GAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTEST: gi|38475976|gb|CF960109.1|CF960109
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
EST: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAG GAGGAGGAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTEST: gi|89173107|gb|CI041000.1|CI041000
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
EST: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAG GAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTEST: gi|86878664|gb|CI340568.1|CI340568
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
EST: CCCCTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTACCTCTGCAG GAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTEST: gi|29683404|gb|CB679679.1|CB679679
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
EST: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAG GAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
genomic: CCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGgtaatagctt ... ttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGT
catccctgataatttgggggtatgctcgtccaatgatgtttccgcttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTGGCCACGCGACTCGGCTCACCGTGGATGATCTGAAGTATCTATTTAGGT
ccctgat putative branch site (score: 27)
tgtttccgcttcttt putative PPT
tgataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgcataatctcatgtagatatgaattatcttgacacaaccaacatccctgataatttgggggtatgctcgtccaatgatgtttccgcttctttacagGAGGAAAAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTGGCCACGCGACTCGGCTCACCGTGGATGATCTGAAGTATCTATTTAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- ttgcata
- - - - - - -catgtag
- - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt