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gtaactgaaattctttatgtgatggttctgtcatgtatcttttgattaagatattttttaactaacctgcttttgccactctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGTTCAATTTGAAGTATAATCCTTGTGGCCAATCC
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|29671780|gb|CB668055.1|CB668055
genomic: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: GTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|88577196|gb|CI673756.1|CI673756
genomic: GTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: AGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|58686177|gb|CK074864.1|CK074864
genomic: AGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: TTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|33793650|gb|CF322709.1|CF322709
genomic: TTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|33679011|gb|CF307250.1|CF307250
genomic: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTEST: gi|88579491|gb|CI688488.1|CI688488
genomic: GGTACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
EST: AGGTTTTTGAGAGTTTGGACTTGACTGG TTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
genomic: AGGTTTTTGAGAGTTTGGACTTGACTGGgtaactgaaa ... actctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATT
atgtatcttttgattaagatattttttaactaacctgcttttgccactctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGTTCAATTTGAAGTATAATCCTTGTGGCCAATCC
aactaac putative branch site (score: 30)
ccactct putative PPT
tcttttgattaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgaaattctttatgtgatggttctgtcatgtatcttttgattaagatattttttaactaacctgcttttgccactctgccagTTATGACCTCAATGTTGATCTCTTAGATGTGCATGCCGATAAAAGTACATTCCATCGCTTTGACAAGTTCAATTTGAAGTATAATCCTTGTGGCCAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG