1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggcattcttcaactactaccatgtttcgctgccatgatctatctttttttaggggatatctcctaatattaatttgggaggctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGGTATATTGTAGTGGTCACGTTCTGCAAACCTGGAAGGAGGTATGAGCTA
species | Oryza sativa |
transcript | LOC_Os07g43470.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACCTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86412717|gb|CI067122.1|CI067122
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: TTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88845150|gb|CI084075.1|CI084075
genomic: TTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGAGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCTAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86498576|gb|CI141209.1|CI141209
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAANGAAAGTTATEST: gi|86887194|gb|CI326009.1|CI326009
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAA-GAAAGTT-T
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88831194|gb|CI082004.1|CI082004
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGAGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTNGGCTAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86887208|gb|CI326023.1|CI326023
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86852710|gb|CI321830.1|CI321830
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: AGTTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88381165|gb|CI525935.1|CI525935
genomic: A-TTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88294527|gb|CI530067.1|CI530067
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88488132|gb|CI425403.1|CI425403
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACNTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|13807087|gb|AU181805.1|AU181805
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88250102|gb|CI249951.1|CI249951
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88840330|gb|CI079784.1|CI079784
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88246122|gb|CI245971.1|CI245971
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86428361|gb|CI075042.1|CI075042
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTNAGEST: gi|86488429|gb|CI131062.1|CI131062
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|5003286|gb|AU068435.1|AU068435
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88842869|gb|CI371769.1|CI371769
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88250137|gb|CI249986.1|CI249986
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|12622128|gb|AU172341.1|AU172341
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88445591|gb|CI544350.1|CI544350
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: AGAGTTGGCAAG GAACATGAGCTTGAGGATGA-GACGTTGNTCCAGATCATCAAGAAANTTTAEST: gi|86858867|gb|CI275094.1|CI275094
genomic: AGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTG-TCCAGATCATCAAGAAAGTTTA
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88830896|gb|CI079330.1|CI079330
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88845195|gb|CI084120.1|CI084120
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGAGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTNGGCTAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTNAGEST: gi|86487602|gb|CI130235.1|CI130235
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88245533|gb|CI245382.1|CI245382
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86525484|gb|CI165690.1|CI165690
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88830576|gb|CI078020.1|CI078020
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTNAGEST: gi|86887193|gb|CI326008.1|CI326008
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86823697|gb|CI258751.1|CI258751
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGCGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|88228618|gb|CI228098.1|CI228098
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGEST: gi|86887118|gb|CI325933.1|CI325933
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
EST: CATT-GTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAG GAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
genomic: CATTGGTGTGGGGTTCTAGCGTGAAGCATAAGCCTCAGAGAGTTGGCAAGgtaggcattc ... ctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAG
atctatctttttttaggggatatctcctaatattaatttgggaggctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGGTATATTGTAGTGGTCACGTTCTGCAAACCTGGAAGGAGGTATGAGCTA
tattaat putative branch site (score: 32)
tcctaatattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcattcttcaactactaccatgtttcgctgccatgatctatctttttttaggggatatctcctaatattaatttgggaggctttgtgcagGAACATGAGCTTGAGGATGAGGACGTTGTCCAGATCATCAAGAAAGTTTAGGTATATTGTAGTGGTCACGTTCTGCAAACCTGGAAGGAGGTATGAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG