1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtgtttttatgaatttatttcctttttatcattgcatccgtagcacttttattctcatctgttaacacttgtttttttttcttttgtatattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCACAGGA
species | Oryza sativa |
transcript | LOC_Os07g20580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTEST: gi|87031255|gb|CI259835.1|CI259835
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTEST: gi|163926476|gb|EG712344.1|EG712344
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTG-C-CTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTEST: gi|29673123|gb|CB669398.1|CB669398
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTEST: gi|218496130|gb|FG950088.1|FG950088
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
EST: GGACGAAAGCTTTATCTTTATTTAAAGAAAGGGTCAATGTCCTTTGAATG ATTGCCACTGAATGTCGCATCCCGGTGGACTTGATATTEST: gi|24468677|gb|CA305626.1|CA305626
genomic: GGACGAAAGCTTTATCTTTATTTAAAGAA-GGGTCA-TGTCCTTTGA-TGgtgcgctaat ... tattttgcagATTGCCACTGA-TGTCGCATCCCG-TGGACTTGATATT
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTEST: gi|218482943|gb|FG953467.1|FG953467
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
EST: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATG ATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
genomic: ACAGGACGAAAGCTTTATCTTTATTTAAAGAAGGGTCATGTCCTTTGATGgtgcgctaat ... tattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTT
cacttttattctcatctgttaacacttgtttttttttcttttgtatattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCACAGGA
tgttaac putative branch site (score: 37)
cttgtttttttttctt CT-rich tract
acttgtttttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtttttatgaatttatttcctttttatcattgcatccgtagcacttttattctcatctgttaacacttgtttttttttcttttgtatattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
ttgtgtt
- - - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctgt