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gtacgcgttacctcctttaattttgtttcctagtcaatgggaatacttcatatcttggagctcatataaactacactccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGATTTTCGTAGGAGAAAACTCGCAATTCCATGAGGATGCCATCCACATGACC
species | Oryza sativa |
transcript | LOC_Os05g10740.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGA GAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAAGACTGATEST: gi|86426764|gb|CI071861.1|CI071861
genomic: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGAgtacgcgtta ... actccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGAT
EST: TCTTCACTCGATAAATGA GAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGATEST: gi|9662820|gb|AU098292.1|AU098292
genomic: TCTTCACTCGATAAATGAgtacgcgtta ... actccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGAT
EST: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGA GAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGATEST: gi|33797484|gb|CF324602.1|CF324602
genomic: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGAgtacgcgtta ... actccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGAT
EST: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGA GAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGAT
genomic: GATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGAgtacgcgtta ... actccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGAT
ctagtcaatgggaatacttcatatcttggagctcatataaactacactccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGATTTTCGTAGGAGAAAACTCGCAATTCCATGAGGATGCCATCCACATGACC
ctccatc CT-rich tract
atataaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgttacctcctttaattttgtttcctagtcaatgggaatacttcatatcttggagctcatataaactacactccatcagGAGGCATGACTTAACAGATGCATTGAGGAAGCTGCAGTGTCGAACACTGATTTTCGTAGGAGAAAACTCGCAATTCCATGAGGATGCCATCCACATGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG