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gtccatttgctagacatatttgaacaaaactcactgtttgtttctcttgcattttgttaccattgttgatgtttaataggaagagtgagcctaaagatctatgcattattccgattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTCAAGTAGGAAGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGG
species | Oryza sativa |
transcript | LOC_Os04g58880.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29641430|gb|CB646437.1|CB646437
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: CAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29627850|gb|CB632861.1|CB632861
genomic: CAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29630824|gb|CB635833.1|CB635833
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29665183|gb|CB661458.1|CB661458
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29624958|gb|CB629969.1|CB629969
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29677754|gb|CB674029.1|CB674029
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29623116|gb|CB628127.1|CB628127
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29677753|gb|CB674028.1|CB674028
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29669621|gb|CB665896.1|CB665896
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29641429|gb|CB646436.1|CB646436
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTEST: gi|29665182|gb|CB661457.1|CB661457
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
EST: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAG GTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
genomic: GAATTGTACAACAAAATGCAAATCATTATAGAAGGATTGCTTGGTCAAAGgtccatttgc ... gattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGT
gatgtttaataggaagagtgagcctaaagatctatgcattattccgattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTCAAGTAGGAAGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGG
gcctaaa putative branch site (score: 27)
attttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccatttgctagacatatttgaacaaaactcactgtttgtttctcttgcattttgttaccattgttgatgtttaataggaagagtgagcctaaagatctatgcattattccgattttacagGTCTTGCAATGCCTCTCTGGTCAAGGTTTGACTTCATCAGGAGGTAGTGGTCAAGTAGGAAGTGAGGGAGGCAATAGCAGTGGAGCTTCAAGAGCTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC