1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttactgcacaatctccctgtgctaaattcagagtaaaaatgtaaagcagtcaggttaagcaagagactgatgcatgaagctgctgctgttcttgtggtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGACCTACATGACCCGTGGGTTCAGGGATGTGAAGGAGATGTGCAGGAGCC
species | Oryza sativa |
transcript | LOC_Os03g58040.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88831027|gb|CI080451.1|CI080451
genomic: TCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88830774|gb|CI079208.1|CI079208
genomic: TTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86600065|gb|CI258405.1|CI258405
genomic: CGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCTG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88222694|gb|CI220835.1|CI220835
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88219022|gb|CI220582.1|CI220582
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|58680379|gb|CK069066.1|CK069066
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGEST: gi|88243792|gb|CI242914.1|CI242914
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|38472486|gb|CF956618.1|CF956618
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGTTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|163920099|gb|EG712029.1|EG712029
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88217782|gb|CI217631.1|CI217631
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86495469|gb|CI138102.1|CI138102
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86427924|gb|CI073021.1|CI073021
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|286451|gb|D15259.1|D15259
genomic: TCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGANGGTGAACAATGAGCTGAAGEST: gi|86884629|gb|CI313008.1|CI313008
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CGAGT-GGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|87029298|gb|CI250231.1|CI250231
genomic: CGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGCTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86823598|gb|CI258678.1|CI258678
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCTG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|89186782|gb|CI052195.1|CI052195
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|33657938|gb|CF280552.1|CF280552
genomic: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|89194432|gb|CI116869.1|CI116869
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|33658194|gb|CF280808.1|CF280808
genomic: CTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: GTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88903728|gb|CI089266.1|CI089266
genomic: GTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGTGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86413329|gb|CI067734.1|CI067734
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|29674432|gb|CB670707.1|CB670707
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGATACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86594959|gb|CI258213.1|CI258213
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86427712|gb|CI072809.1|CI072809
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGTGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88840508|gb|CI079962.1|CI079962
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86432637|gb|CI086248.1|CI086248
genomic: TCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|8527504|gb|AU092319.1|AU092319
genomic: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|66919027|gb|CX105875.1|CX105875
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CGCGAA-TCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGATTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|58593842|gb|CF992150.1|CF992150
genomic: CGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGATTTCATGTGGGACGAGGAGAAGGGGAACAATGAGCTGAAEST: gi|3760756|gb|C98010.1|C98010
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGG-TTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAA
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88829653|gb|CI074523.1|CI074523
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: GTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88964890|gb|CI084888.1|CI084888
genomic: GTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86594966|gb|CI258220.1|CI258220
genomic: TTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACCATGAGCTGAAGEST: gi|88955378|gb|CI091470.1|CI091470
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: GGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|88955867|gb|CI092155.1|CI092155
genomic: GGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|13420757|gb|AU174847.1|AU174847
genomic: CCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|86435976|gb|CI107209.1|CI107209
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|29679311|gb|CB675586.1|CB675586
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGEST: gi|87008623|gb|CI315081.1|CI315081
genomic: TCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
EST: CGAACTCCGGT-GTGTCACAGTGAGCTACTTGGAGTGGGTTCAG AACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
genomic: CGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttact ... gtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAG
aggttaagcaagagactgatgcatgaagctgctgctgttcttgtggtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGACCTACATGACCCGTGGGTTCAGGGATGTGAAGGAGATGTGCAGGAGCC
gactgat putative branch site (score: 7)
tttgttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttactgcacaatctccctgtgctaaattcagagtaaaaatgtaaagcagtcaggttaagcaagagactgatgcatgaagctgctgctgttcttgtggtttgttcagAACATTCAGGGTTTCATGTGGGACGAGGAGAAGGTGAACAATGAGCTGAAGACCTACATGACCCGTGGGTTCAGGGATGTGAAGGAGATGTGCAGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG