1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...catatttaatgtgtgcctatatttttaatacaccatttttatgtccataatgaagttaacctgtgctcatgttttgatatatcttatgctatttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG
species | Oryza sativa |
transcript | LOC_Os03g50850.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATEST: gi|4714942|gb|AU056059.1|AU056059
genomic: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
EST: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCNACTAGATGAG ATCATTGTACGGACAAAGGGAAAATGCAGAGAAGAAGCTGACNCTCACATAEST: gi|29625135|gb|CB630146.1|CB630146
genomic: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGG-AAAATGCAGAGAAGAAGCTGACTCTCACATA
EST: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATEST: gi|29664559|gb|CB660834.1|CB660834
genomic: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
EST: TGCTTTAATGGAAGTAGAGATGAGGGCGCCTTTGTGAGCTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATEST: gi|29664555|gb|CB660830.1|CB660830
genomic: TGCTTTAATGGAAGTAAAGATGA-GGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
EST: TGGAAGTAAAGATGAGGCGCCTTTGTGAGGTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATEST: gi|218503878|gb|FG953739.1|FG953739
genomic: TGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
EST: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATEST: gi|29639904|gb|CB644913.1|CB644913
genomic: TTGCTTTAATGGAAGTAAAGATGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
EST: TGAGGCGCCTTTGTGAGCTACTAGATGAG ATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
genomic: TGAGGCGCCTTTGTGAGCTACTAGATGAGgtcagctttg ... atttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATAT
cataatgaagttaacctgtgctcatgttttgatatatcttatgctatttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG
ttttgatatatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttaatgtgtgcctatatttttaatacaccatttttatgtccataatgaagttaacctgtgctcatgttttgatatatcttatgctatttatgcagATCATTGTACGGACAAAGGAAAATGCAGAGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - gtgccta
- - - - - - - - - - - - - - tacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgc