1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gttagttttattgttttcttctttattatttttaaggaattatgcttgtctctcttaatagatcgaacatctttccacatcttgctatccttttatccaacccttctctttttttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG
species | Oryza sativa |
transcript | LOC_Os02g54500.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTATCAAAGAGGTCTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|218480869|gb|FG961184.1|FG961184
genomic: CTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|29686600|gb|CB682875.1|CB682875
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|58607153|gb|CK035186.1|CK035186
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|29621606|gb|CB626617.1|CB626617
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: CTTATCAAAGAGGCCTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|29673628|gb|CB669903.1|CB669903
genomic: CTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|2310509|gb|C26664.1|C26664
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGEST: gi|58612546|gb|CK040258.1|CK040258
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
EST: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAG GTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
genomic: ATCTTATCAAAGAGGTTTCATGGCTTGACTATGGCCATAAGGGGATGCAGgttagtttta ... tttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTG
catctttccacatcttgctatccttttatccaacccttctctttttttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG
tcttgctatcctttta CT-rich tract
ttctcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttattgttttcttctttattatttttaaggaattatgcttgtctctcttaatagatcgaacatctttccacatcttgctatccttttatccaacccttctctttttttttggcagGTGTGGTACCCATCCCATGGAGAAAATCCTTTTAAACAAGAAGATTTCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG