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gtaagcagtgcctccttttgcttcctcgggattacttcttgaagtatggaaactgtactgtttttatttctgttgatcactcttttgatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAG
species | Oryza sativa |
transcript | LOC_Os01g55360.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|86437554|gb|CI119276.1|CI119276
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|29679198|gb|CB675473.1|CB675473
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|86504386|gb|CI147019.1|CI147019
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|29681975|gb|CB678250.1|CB678250
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|29671304|gb|CB667579.1|CB667579
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATEST: gi|313081133|gb|HO213719.1|HO213719
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
EST: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAG GATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
genomic: CTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtg ... gatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGAT
aagtatggaaactgtactgtttttatttctgttgatcactcttttgatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAG
ttttgat putative branch site (score: 4)
ctcttttg CT-rich tract
tactgtttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagtgcctccttttgcttcctcgggattacttcttgaagtatggaaactgtactgtttttatttctgttgatcactcttttgatgtggtagGATTTTGGAGACAGCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG